miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cynodon dactylon, Eragrostis curvula, Panicum virgatum, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Cenchrus ciliaris, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST055022
species: Zea mays
miRNA family: MIR169
source: PMRD, original name: zma-miR169t

Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CAGCCAAGGATGACTTGCCGA

miRNA*
 GGCAAGTTGTTCTTGGCTA

mismatches: 3
bulges: 0
View larger
pre-miRNA
 CAGCCAAGGATGACTTGCCGATCTATCGTCGATCAACGAGCGACGCCTCTGATGTCTGATCTCGACATCTATCGTCGTCAGACCATCATCATCTATCGGC
AAGTTGTTCTTGGCTA

dot-bracket secondary structure
.(((((((((..((((((((((....(((((.((...)).)))))....(((((((((((..(((......)))..)))))).)))))......))))))
))))..))))))))).


SIMILARITIES
miRBase zma-MIR169b: 2e-61

PMRD zma-miR169b: 2e-61

microPC miR169: 0.000001		UniProt no hits

RFAM MIR169_2: 0.00003

Identical with: zma-miR169b from PMRD (MNEST055004)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record




Liczniki na strone;